Here, you can download software packages.

Dynamic Fast Marching Method

Last modifications: October 28, 2024

A package in Julia programming language (for 2D and 3D simulations) and a package in MatLab. Note: To download the packages, please right-click and select «save link as» (some browsers may have problems with left-click). If you still cannot download the package, write an e-mail. 

Examples of different situations and their solutions (supplementary videos for the manuscript).

Artifact removal method based on the wavelet enhanced Independent Component Analysis (wICA)

Original package: wICA

Updated Oct. 2012 (no extra packages are required): wICA_2

For details, see Castellanos N. P. and Makarov V. A. Recovering EEG brain signals: Artifact suppression with wavelet enhanced independent component analysis. Neurosci. Methods 158, 300-312, 2006.

Analysis of LFP generators (ICAofLFPs package for Matlab

Package v. 1.09 (Sept. 2021: some fixes): ICAofLFPs Package

Installation instruction: Reedme

Basic (short) help: Help for ICAofLFPs

Test data file: Sch_Lac_Aleat_mat (91 MB). This file contains raw LFPs and already found LFP-generators (you can play around and, e.g., crosscheck your generators with ours).

An example of a smr data file (Cambridge Electronic Design): Link to SMR (39 MB). The file has 32 channels of raw LFPs recorded from the rat hippocampus. Use «1 linear» for the electrode arrangement inside ICAofLFPs.

Look at the review: New uses of LFPs: Pathway-specific threads obtained through spatial discrimination. Neuroscience Forefront Review, 2015.

Some other references:

Makarov V.A., Makarova J., and Herreras O. “Disentanglement of local field potential sources by independent component analysis”, J. Computational Neuroscience 29, 445-457, 2010.

Korovaichuk A., Makarova J., Makarov V.A., Benito N., and Herreras O. “Minor contribution of principal excitatory pathways to hippocampal LFPs in the anesthetized rat: a combined independent component and current source density study”, J. Neurophysiology 104, 484-497, 2010.

Herreras O., Torres D., Martín-Vázquez G., Hernández-Recio S., López-Madrona V.J.,  Benito N., Makarov V.A., Makarova J. «Site-dependent shaping of field potential waveforms», Cerebral Cortex 33(7), 3636–3650, 2023.